# Auto-generated batch file Tue Apr  2 14:09:35 2024
cd /uufs/chpc.utah.edu/common/home/sdss50/sdsswork/bhm/boss/spectro/redux/v6_1_3/102403
export BOSS_SPECTRO_DATA=$BOSS_SPECTRO_DATA_N
export GCAM_DATA=$GCAM_DATA_N

#- Echo commands to make debugging easier
set -o verbose

#- The real work
readfibermaps.py --spplan2d spPlan2d-102403-60130.par --dr19
touch spec2d-102403-60130.started
echo 'spreduce2d, /MWM_fluxer, map3d=bayestar15, "spPlan2d-102403-60130.par"' | idl
touch spec2d-102403-60130.done
touch specombine-102403-60130.started
echo 'rm_combine_script, "spPlancomb-102403-60130.par",/xyfit, /loaddesi, /MWM_fluxer, /no_reject, run2d="v6_1_3"' |idl
touch specombine-102403-60130.done
touch spec1d-102403-60130.started
echo 'spreduce1d_empca, "spField-102403-60130.fits", run1d="v6_1_3"' |idl
run_PyXCSAO.py spField-102403-60130.fits --run1d "v6_1_3"
touch spec1d-102403-60130.done

#- Make Field List
fieldlist.py --create --run1d v6_1_3 --run2d v6_1_3  --logfile fieldlist-102403-60130.log

#- Make Field spAll file
fieldmerge.py  --include_bad --XCSAO --clobber --run2d v6_1_3 --field 102403 --mjd 60130

#- Make final spectra files
spSpec_reformat.py --field 102403 --mjd 60130 -p --run1d v6_1_3 --run2d v6_1_3 

#- Make Spectro-Photometric Calibration QA Figures
echo 'spcalib_qa, fieldid=102403, mjd=60130, run2d="v6_1_3"' |idl
#- Make the healpix links
sas_mwm_healpix --spectro boss --mjd 60130 --telescope apo25m --drpver v6_1_3 -v