## this files lists all possible parameters and options.  Some have defaults in mksamplemaster.py so don't need to be specified.
## Defaults in this file are for the dr12v5 catalogs.
##############################################################################
## List of Parameters.
##############################################################################
runtag = dr12vtest      ## append to catalog file names to identify catalog run.  also tag for LOWZ in case of combined mask.
runtagCMASS = dr12vtest ## tag for CMASS catalogs to be combined.
nrancats = 2            ## number of random catalogs to generate.
RoDfac = 52.0           ## raw number of randoms to generate compared to number of data, where this number of randoms is before veto (so increase by ~5% from final value)
RoDfacsys = 10.5        ## raw number of randoms to generate compared to number of data, where this number of randoms is before veto (so increase by ~5% from final value)
samplerngseeds = [578708690, 2072652973, 2069565457, 1147349261, 1125647807, 844666025, 2099787806] ## make separate but repeatable random number seeds for cmass, lowz, lowzearly2, lowzearly3-6, cmasslowz, cmasslowzearly2, cmasslowzearly3-6
catalog_type = 3        ## 3 is default for DR12v5 LSS catalogs.  0 runs the DR11 version ('Anderson') of mksample.  4, 5 also options to make 'ang' and 'target' catalogs.  See code for details.
cattypetag = Reid       ## tag to identify the catalog parameters.
zminsys = -1            ## min redshift for fitting systematic paramters.  zmin is 0.35 (0.2) for CMASS (LOWZE2)
zmaxsys = -1            ## max redshift for fitting systematic paramters.  zmin is 1.0 (0.5) for CMASS (LOWZE2)
legacynbropt = 1        ## allow "known" (legacy) targets to receive FB weight if they're the closest target.  Default is 1.
dolegacycollide = 0     ## artificially remove fiber collisions between BOSS and legacy targets.  Turned on in DR10/11, turned off in DR12.
ifib2zfailweight = 0    ## 1 for CMASS, 0 for LOWZ
## uncomment only if you want to use them.
#sysseewgtfile =        ## file containing parameters for systematic seeing weights.
#sysstwgtfile =         ## file containing parameters for systematic stellar weights.
#nbar_new_omegam = 0.31 ## use to convert original nbar calculation into a new cosmology with different omega_m.
#nbar_new_tag =         ## Label the file with your choice (i.e., 'om0p31')
#P0 = 20000.0           ## new value of P0 for FKP weights.  Default is 20000 in the code, though DR12 catalogs use 10000.0
##############################################################################
## Specify which samples to operate on.
## 1 turns that sample on, 0 off.
## [1,0]: north only. [0,1]: south only. [1,1]: north and south.
##############################################################################
cmassopt = [1,1]
lowzopt = [1,1]
lowzearly2opt = [1,1]
lowzearly3opt = [1,1]
cmasslowzopt = [0,0]
cmasslowzearly2opt = [0,0]
cmasslowzearly3opt = [0,0]
##############################################################################
## Tasks.  See examples.
##############################################################################
rungetcollate = 1 
runbinarymask = 1
runspallmatch = 0
runfiberczfail = 0
runcombinestep = 0
runmakemask = 0
makesysrandoms = 0
getsysrandoms = 0
runcatradec = 0
runcatz = 0
fillranBOSSim = 0
nbar_newcosmo = 0
nbar_reassign = 0
dolowztrim = 0
## uncomment only if you want to use them.
#cptodir =
#docombineN =  
##############################################################################
## Input files and paths.
##############################################################################
input_dir = ../inputfiles/
data_dir = ../data/
collatefile = bosstile-final-collated-boss2-boss38.fits.gz  ## located in input_dir
collatefilephoto = bosstile-final-collated-boss2-boss38-galimaging.fits.gz  ## located in input_dir
known_file = spAll_primary_good.fits.gz                     ## located in input_dir
spall_file = spAll-v5_7_0.fits                           ## located in input_dir 
platelist_file = platelist.fits                          ## located in input_dir
geom_file = ../geometry/boss_geometry_2014_05_28.fits    ## give full path to geom_file.
## uncomment only if you want to use this; default is None.
#collided_file_for_targcat =