LOGFILE = pipeline.log
ZEROS = zero.list
DARKS = dark.list
ALL = all.list
TUNGNF = tungnf.list
TIONF = tionf.list
THARNF = tharnf.list
THARNFIO = tharnfio.list
WITHIO = withio.list
NOIO = noio.list
THAR = thar.list
INST_MODE = marvels
OVERWRITE_FILES = no
SKIP_PREPROCESSING = yes
MAKE_BIAS_FILE = yes
MAKE_FLAT_FILE = yes
MAKE_TRACE_FILE = yes
MAKE_THAR_FILE = yes
MAKE_TIONF_FILE = yes
MAKE_TIO_FILE = yes
MAKE_TUNG_FILE = yes
MAKE_TRIM_FILE = yes
MAKE_SLANT_FILE = yes
MAKE_ILLUM_FILE = yes
MAKE_DISTORT_FILE = yes
MAKE_TWOPASS_WHIRLS = yes
DO_BIAS_SUBTRACT = yes
DO_DARK_COMBINE = no
DO_DARK_SUBTRACT = no
DO_SCATTERED_LIGHT_SUBTRACT = no
DO_FLAT_COMBINE = no
DO_FLAT_DIVIDE = no
DO_FLAT_REPLACE = no
DO_BAD_PIXEL_MASK = no
DO_SLANTCORRECT = yes
DO_TRACECORRECT = yes
DO_ILLUMCORRECT = yes
DO_DISTORTCORRECT = no
USE_DISTORTCOEFFS = yes
DO_COMBDIVISION = no
DO_COMBFILTER = yes
USE_ILLUMBOXCAR = yes
COSMIC_RAY_PASSES =  3
COSMIC_RAY_SIGCLIP =  4
POLY_ORDER =  6
FLAT_LIST = tungnf.list
FLAT_COMBINE_METHOD = mean
DEFAULT_BAD_PIXEL_MASK = 
TRIM_METHOD = auto
TRIM_MANUAL = trim.dat
TRIM_SIGMA =  1.70000
TRIM_WIDTH =  20.0000
TRIM_LOWER = 30
TRIM_UPPER = 4040
FILTER_CUTOFF = 5.0
FILTER_SHOW = no
OBSERVATORY_NAME = APO
OBSNAME = APO
FILEIDS = fileids.dat
ZERO_SUBTRACTED_PREFIX = zeroSubtracted/zs_
DARK_SUBTRACTED_PREFIX = darkSubtracted/ds_
BACKGROUND_SUBTRACTED_PREFIX = backSubtracted/bs_
FLAT_DIVIDED_PREFIX = flatDivided/fd_S
FLAT_DIVIDED_NOFLAT_PREFIX = flatDivided/fd_noFlat_S
TRIMMED_SPECTRA_PREFIX = trimmedSpectra/ts_S
TRIMMED_SPECTRA_NOFLAT_PREFIX = trimmedSpectra/ts_noFlat_S
FINETRIM_NOFLAT_PREFIX = finetrim/ft_noFlat_S
WHIRL_PREFIX = whirls/S
WHIRLLINK_PREFIX = whirllinks/S
REFERENCE_PREFIX = ../vel_reference/
REFERENCE_STARNAME = solar
REFERENCE_FILE = vel_reference.dat
VELREF_TEMPLATEWHIRL = /data/deleen/MARVELS/STANDARDS/VELREF_TEMPLATEWHIRL/MARVELS1.2008-10-10T07:52:33.650.whrl.fits
TIO_RESULTSTABLE = 
CCD_MASK_FILE = /astro/data/cusa1/suvrath/SOPHIE/MASK/SOPHIEmask.fits
BIAS_FILE = bias/marvels.bias.fits
FLAT_FILE = flat/marvels.flat.fits
NORM_FLAT_FILE = flat/marvels.flat.norm.fits
THAR_FILE = thar/thar.fits
TIO_FILE = tio/tio.fits
TIONF_FILE = tionf/tionf.fits
TRIM_FILE = trim/trim.dat
TRIM_EXTRAPADDING = 15
WHIRLMARGINTRIM = 3
TIO_DIR = tio/
TUNG_FILE = tung/tung.fits
TUNG_DIR = tung/
SLANT_DIR = slant/
DISTORT_FILE_DIR = distort/
TRACE_FILE_DIR = order_trace/
RAW_DATA_DIR = et1/
PLUGMAP_DIR = plugmap1/
WAVECAL_DIR = /data/deleen/MARVELS/MARVELS_REDUX/v001.70/PARAMS/wavecal/
MASTERCALIBS_DIR= /data/deleen/MARVELS/MARVELS_REDUX/v001.70/55165/reduction1/
REDUCTION_DIR= reduction1/
PROCESSED_IMAGES_DIR = processed_images/
WHIRLS_DIR= whirls/
TWOPASS_WHIRLS_DIR = twopass_whirls/
TWOPASS_FREQGUESS = 0.8
THAR_DIR = thar/
FLAT_DIR = flat/
A_USEOLD_SLITF = no
B_USEOLD_SLITF = yes
MEASURESHIFT_DISPTRIM = 300, 3900 
MEASURESHIFT_POLYFIT = 4
MEASURESHIFT_METHOD = 14
MEASURESHIFT_SIGMAREJECT = no
MEASURESHIFT_REFADDED = no
IO_BRACKETING = yes
STAR_BRACKETING = yes
STARIO_EXTRACTION = no
BIN_DISPERSION = no
BIN_FACTOR = 1
SVFIT = no
MPFIT = yes
outputwhirlcomparison = no
outputintermedimages = no
quadraticwhirlbkg = no
dphidvtablename=/data/deleen/MARVELS/MARVELS_REDUX/v001.70/PARAMS/fre_coe_std.dat
whirl_thresh_nanfrac = 0.99
ccf_halfsearchrange_pix = 50
manualrefrowoffset=0
USE_GHOST_MASK = no
GHOST_MASK_FILE = /data/deleen/MARVELS/MARVELS_REDUX/v001.70/PARAMS/masks/ghosts/combinedmask_thresh30_trimmed.fits
GRAPHICS_ON = no
SINEFITTING_CHIMAX = 100.0
SIGCLIPITER=1
METHOD_2D_SFIT = yes